Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34785

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,406,834	+				+0.6
3,406,836	+				-0.5
3,406,837	-				-0.8
3,406,837	-				-0.7
3,407,091	+		BPHYT_RS34780	0.15	-0.7
3,407,193	+		BPHYT_RS34780	0.27	-1.7
3,407,346	+		BPHYT_RS34780	0.45	-2.4
3,407,347	-		BPHYT_RS34780	0.45	-0.1
3,407,393	-		BPHYT_RS34780	0.50	-0.1
3,407,700	+		BPHYT_RS34780	0.87	-0.9
3,407,831	+				-0.5
3,407,831	+				+0.0
3,407,831	+				-1.7
3,407,831	+				-0.6
3,407,831	+				-0.6
3,407,950	+		BPHYT_RS34785	0.10	+0.5
3,408,025	+		BPHYT_RS34785	0.16	+1.3
3,408,123	+		BPHYT_RS34785	0.24	-0.6
3,408,123	+		BPHYT_RS34785	0.24	-0.4
3,408,123	+		BPHYT_RS34785	0.24	+0.6
3,408,123	+		BPHYT_RS34785	0.24	-0.2
3,408,196	+		BPHYT_RS34785	0.30	+0.3
3,408,967	-				-0.1
3,409,016	+				-1.3
3,409,053	+				-0.5