Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34745

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,398,363	+		BPHYT_RS34730	0.45	+0.1
3,398,533	+				+0.2
3,398,533	+				+2.5
3,398,534	-				+0.5
3,398,534	-				-1.4
3,398,564	+		BPHYT_RS34735	0.14	+0.1
3,398,564	+		BPHYT_RS34735	0.14	+0.4
3,398,564	+		BPHYT_RS34735	0.14	+0.7
3,398,576	+		BPHYT_RS34735	0.18	-0.5
3,398,753	+		BPHYT_RS34735	0.80	+0.9
3,398,754	-		BPHYT_RS34735	0.80	+0.5
3,398,835	+				-0.5
3,398,871	+		BPHYT_RS34740	0.22	+0.4
3,398,872	-		BPHYT_RS34740	0.22	+1.9
3,398,888	-		BPHYT_RS34740	0.28	-0.5
3,398,975	-		BPHYT_RS34740	0.59	+1.1
3,399,170	+				-1.4
3,399,171	-				+0.2
3,399,171	-				+0.1
3,399,222	-				-1.1
3,399,266	+				+1.0
3,399,343	-		BPHYT_RS34745	0.38	+1.9
3,399,450	+		BPHYT_RS34745	0.89	+1.1
3,399,496	+				+0.2
3,399,496	+				+0.7
3,399,496	+				-1.4
3,399,496	+				+0.8
3,399,496	+				+2.1
3,399,496	+				+0.5
3,399,496	+				+1.3
3,399,497	-				+0.5
3,399,497	-				+0.5
3,399,497	-				-0.6
3,399,497	-				+1.3
3,399,497	-				-0.7
3,399,500	+				+0.9
3,399,500	+				-0.1
3,399,501	-				+0.1
3,399,501	-				-2.4
3,399,526	-				-0.2
3,399,526	-				-0.1
3,399,526	-				-0.1
3,399,526	-				+0.5
3,399,526	-				-1.0
3,399,710	+				+0.7
3,399,710	+				+1.1
3,399,710	+				-0.5
3,399,710	+				-1.5
3,399,710	+				-2.0
3,399,722	+				+0.8
3,399,737	+				+1.0
3,399,737	+				-0.2
3,399,738	-				+3.0
3,399,738	-				+0.8
3,399,777	+				-0.9
3,399,777	+				-0.1
3,399,778	-				-1.1
3,399,821	+				-0.0
3,399,821	+				+0.4
3,399,821	+				+0.9
3,399,821	+				+0.7
3,399,822	-				-1.6
3,399,822	-				+1.0
3,399,822	-				+3.9
3,399,822	-				+2.0
3,399,822	-				+2.5
3,399,822	-				+0.3
3,399,951	+		BPHYT_RS34750	0.21	-0.0
3,399,952	-		BPHYT_RS34750	0.21	+0.2
3,399,952	-		BPHYT_RS34750	0.21	-1.0
3,399,953	+		BPHYT_RS34750	0.21	+0.3
3,399,953	+		BPHYT_RS34750	0.21	+0.1
3,399,953	+		BPHYT_RS34750	0.21	+0.6
3,399,953	+		BPHYT_RS34750	0.21	+1.1
3,399,954	-		BPHYT_RS34750	0.21	+0.8
3,399,954	-		BPHYT_RS34750	0.21	+0.9
3,399,954	-		BPHYT_RS34750	0.21	+0.1
3,399,954	-		BPHYT_RS34750	0.21	-0.2
3,399,971	-		BPHYT_RS34750	0.25	+0.8
3,399,982	+		BPHYT_RS34750	0.26	-0.5
3,399,982	+		BPHYT_RS34750	0.26	-0.4
3,399,982	+		BPHYT_RS34750	0.26	-0.7
3,399,982	+		BPHYT_RS34750	0.26	-0.4
3,399,983	-		BPHYT_RS34750	0.27	+2.2
3,399,983	-		BPHYT_RS34750	0.27	-1.2
3,400,228	+		BPHYT_RS34750	0.71	+1.2
3,400,228	+		BPHYT_RS34750	0.71	-0.6
3,400,229	-		BPHYT_RS34750	0.71	-0.7
3,400,321	-		BPHYT_RS34750	0.88	+1.6
3,400,334	+				-2.1
3,400,354	+				+0.7
3,400,433	-				+0.5