Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34730

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,397,440	+				+0.5
3,397,441	-				-0.4
3,397,516	+				-0.1
3,397,525	+				-0.7
3,397,525	+				+0.3
3,397,525	+				+0.7
3,397,525	+				+0.2
3,397,526	-				+0.1
3,397,526	-				+0.1
3,397,548	+				+0.5
3,397,549	-				-0.2
3,397,559	-				+0.3
3,397,599	-				+0.7
3,397,640	+				-0.5
3,397,640	+				+0.6
3,397,640	+				-0.9
3,397,641	-				+0.2
3,397,641	-				+0.2
3,397,641	-				-0.6
3,397,656	-				+0.1
3,397,657	+				-1.4
3,397,657	+				-1.6
3,397,657	+				+1.4
3,397,658	+				-1.6
3,397,658	-				+0.2
3,397,658	-				+2.5
3,397,658	-				+0.5
3,397,658	-				-1.0
3,397,658	-				-0.0
3,397,658	-				-0.7
3,397,658	-				+0.3
3,397,930	-				+0.2
3,398,053	+				+0.9
3,398,250	+				+0.7
3,398,250	+				-0.7
3,398,254	-				-0.9
3,398,363	+		BPHYT_RS34730	0.45	+0.1
3,398,533	+				+0.2
3,398,533	+				+2.5
3,398,534	-				+0.5
3,398,534	-				-1.4
3,398,564	+		BPHYT_RS34735	0.14	+0.1
3,398,564	+		BPHYT_RS34735	0.14	+0.4
3,398,564	+		BPHYT_RS34735	0.14	+0.7
3,398,576	+		BPHYT_RS34735	0.18	-0.5
3,398,753	+		BPHYT_RS34735	0.80	+0.9
3,398,754	-		BPHYT_RS34735	0.80	+0.5
3,398,835	+				-0.5
3,398,871	+		BPHYT_RS34740	0.22	+0.4
3,398,872	-		BPHYT_RS34740	0.22	+1.9
3,398,888	-		BPHYT_RS34740	0.28	-0.5
3,398,975	-		BPHYT_RS34740	0.59	+1.1
3,399,170	+				-1.4
3,399,171	-				+0.2
3,399,171	-				+0.1
3,399,222	-				-1.1
3,399,266	+				+1.0
3,399,343	-		BPHYT_RS34745	0.38	+1.9
3,399,450	+		BPHYT_RS34745	0.89	+1.1
3,399,496	+				+0.2
3,399,496	+				+0.7
3,399,496	+				-1.4
3,399,496	+				+0.8
3,399,496	+				+2.1
3,399,496	+				+0.5
3,399,496	+				+1.3
3,399,497	-				+0.5
3,399,497	-				+0.5
3,399,497	-				-0.6
3,399,497	-				+1.3
3,399,497	-				-0.7
3,399,500	+				+0.9
3,399,500	+				-0.1
3,399,501	-				+0.1
3,399,501	-				-2.4