Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34350

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,310,695	+		BPHYT_RS34345	0.42	-0.6
3,310,695	+		BPHYT_RS34345	0.42	+0.3
3,310,695	+		BPHYT_RS34345	0.42	-0.3
3,310,696	-		BPHYT_RS34345	0.42	+0.6
3,310,696	-		BPHYT_RS34345	0.42	-0.0
3,310,872	+		BPHYT_RS34345	0.55	-0.6
3,311,317	+		BPHYT_RS34345	0.86	+0.0
3,311,318	-		BPHYT_RS34345	0.86	+0.3
3,311,485	-				+0.8
3,311,487	+				-0.6
3,311,567	-				-0.1
3,311,877	-		BPHYT_RS34350	0.67	+0.3
3,311,897	+		BPHYT_RS34350	0.72	-0.0
3,311,897	+		BPHYT_RS34350	0.72	-2.4
3,311,898	-		BPHYT_RS34350	0.72	-0.2
3,311,907	-		BPHYT_RS34350	0.74	-0.3
3,312,032	-				+0.3
3,312,293	+				-0.2
3,312,293	+				+2.9
3,312,294	-				-0.6
3,312,443	-		BPHYT_RS34355	0.12	+1.9
3,312,443	-		BPHYT_RS34355	0.12	+1.7
3,312,443	-		BPHYT_RS34355	0.12	-0.7
3,312,556	+		BPHYT_RS34355	0.15	-2.2
3,312,976	+		BPHYT_RS34355	0.27	-1.6