Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34325

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,304,825	+				-1.8
3,304,933	-				+0.9
3,305,283	+				-0.1
3,305,284	-				-0.2
3,305,288	+				-1.1
3,305,416	+		BPHYT_RS34320	0.12	-0.1
3,305,416	+		BPHYT_RS34320	0.12	-0.6
3,305,477	+		BPHYT_RS34320	0.33	+0.5
3,305,552	+		BPHYT_RS34320	0.59	-0.1
3,305,660	+				-1.4
3,305,661	-				+0.2
3,305,714	+				-1.6
3,305,715	-				+1.4
3,305,715	-				+0.5
3,305,772	+				+0.2
3,305,824	+				-1.1
3,305,935	+		BPHYT_RS34325	0.11	+0.3
3,306,182	-		BPHYT_RS34325	0.31	+0.4
3,306,182	-		BPHYT_RS34325	0.31	-0.1
3,306,272	+		BPHYT_RS34325	0.39	+0.1
3,306,273	-		BPHYT_RS34325	0.39	+0.4
3,306,301	+		BPHYT_RS34325	0.41	-0.9
3,306,302	-		BPHYT_RS34325	0.41	+1.7
3,306,302	-		BPHYT_RS34325	0.41	+0.2
3,306,458	-		BPHYT_RS34325	0.54	+2.5
3,306,562	+		BPHYT_RS34325	0.63	-0.1
3,306,944	-				-0.0
3,306,944	-				-0.6
3,306,944	-				-0.4
3,306,944	-				+0.4
3,306,944	-				+0.2
3,307,083	+				+0.4
3,307,084	-				+1.2
3,307,214	+				+0.8
3,307,232	+				-0.8
3,307,359	+		BPHYT_RS34330	0.56	-0.4
3,307,390	+		BPHYT_RS34330	0.72	+0.7
3,307,391	-		BPHYT_RS34330	0.72	+0.9
3,307,391	-				+2.3
3,307,400	+		BPHYT_RS34330	0.76	+0.9
3,307,400	+		BPHYT_RS34330	0.76	-0.1
3,307,400	+		BPHYT_RS34330	0.76	-1.6
3,307,401	-		BPHYT_RS34330	0.77	-1.5
3,307,401	-		BPHYT_RS34330	0.77	+0.9
3,307,401	-		BPHYT_RS34330	0.77	+0.1
3,307,475	-				-1.0
3,307,565	+				-1.3
3,307,651	-				+0.2
3,307,726	-				-0.5
3,307,796	-				-1.4
3,307,806	+				-0.2
3,307,807	-				+1.5
3,307,807	-				+0.5
3,307,861	+				-0.9
3,307,862	-				-0.6
3,307,927	+				+1.3
3,307,927	+				-0.1
3,307,927	+				-0.2
3,307,966	+				+0.1
3,307,967	-				-0.8
3,307,969	+				+0.3
3,307,969	+				+0.6
3,307,969	+				-0.9
3,307,970	-				+0.6
3,307,970	-				+2.9
3,307,987	+				+1.5