Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34150

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,264,573	+		BPHYT_RS34140	0.81	+0.9
3,264,574	-		BPHYT_RS34140	0.81	-1.1
3,264,574	-		BPHYT_RS34140	0.81	+1.2
3,264,896	+				-1.9
3,265,035	-		BPHYT_RS34145	0.23	+0.4
3,265,035	-		BPHYT_RS34145	0.23	-0.6
3,265,035	-		BPHYT_RS34145	0.23	+0.4
3,265,041	+		BPHYT_RS34145	0.24	-0.1
3,265,042	-		BPHYT_RS34145	0.24	+0.6
3,265,064	+		BPHYT_RS34145	0.29	-0.3
3,265,064	+		BPHYT_RS34145	0.29	-0.2
3,265,065	-		BPHYT_RS34145	0.29	+0.2
3,265,131	-		BPHYT_RS34145	0.45	-0.9
3,265,131	-		BPHYT_RS34145	0.45	+2.2
3,265,316	+		BPHYT_RS34145	0.87	+0.1
3,265,316	+		BPHYT_RS34145	0.87	+0.3
3,265,316	+		BPHYT_RS34145	0.87	-0.7
3,265,513	-				+1.7
3,265,675	+		BPHYT_RS34150	0.21	-1.6
3,265,675	+		BPHYT_RS34150	0.21	+0.8
3,265,676	-		BPHYT_RS34150	0.21	-0.1
3,265,708	-		BPHYT_RS34150	0.26	+1.4
3,265,963	+		BPHYT_RS34150	0.68	+0.7
3,266,143	-				+0.1
3,266,148	+				+1.8
3,266,149	-				-0.6
3,266,197	+				+0.4
3,266,197	+				+0.1
3,266,325	+				-0.7
3,266,325	+				+0.9
3,266,413	-		BPHYT_RS34155	0.14	-0.8