Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33940

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,207,376	-				-0.9
3,207,445	-				-0.8
3,207,522	-				-0.4
3,207,537	+				-2.2
3,207,537	+				-1.6
3,207,537	+				-1.6
3,207,538	-				+0.2
3,207,538	-				-0.9
3,207,538	-				+0.1
3,207,555	+				-1.4
3,207,555	+				-0.1
3,207,556	-				+1.5
3,207,556	-				-0.2
3,207,591	+				-0.1
3,207,592	-				+1.5
3,207,592	-				-1.6
3,207,592	-				-2.2
3,207,595	+		BPHYT_RS33950	0.10	-1.1
3,207,595	+		BPHYT_RS33950	0.10	-0.6
3,207,595	+		BPHYT_RS33950	0.10	-1.4
3,207,595	+		BPHYT_RS33950	0.10	-0.6
3,207,595	+		BPHYT_RS33950	0.10	-1.8
3,207,595	+		BPHYT_RS33950	0.10	-0.6
3,207,596	-		BPHYT_RS33950	0.10	-3.1
3,207,596	-		BPHYT_RS33950	0.10	-2.1
3,207,596	-		BPHYT_RS33950	0.10	-1.6
3,207,596	-		BPHYT_RS33950	0.10	+0.5
3,207,596	-		BPHYT_RS33950	0.10	-1.3
3,207,596	-		BPHYT_RS33950	0.10	-0.9
3,207,596	-		BPHYT_RS33950	0.10	-1.1
3,207,596	-		BPHYT_RS33950	0.10	-0.3
3,207,596	-		BPHYT_RS33950	0.10	-0.6
3,207,617	+		BPHYT_RS33950	0.13	-0.3
3,207,618	-		BPHYT_RS33950	0.13	-0.1
3,207,738	+		BPHYT_RS33950	0.28	-0.1
3,207,751	+		BPHYT_RS33950	0.29	-2.6
3,207,751	+		BPHYT_RS33950	0.29	-1.0
3,207,751	+		BPHYT_RS33950	0.29	-1.5
3,207,752	-		BPHYT_RS33950	0.30	-1.1
3,207,752	-		BPHYT_RS33950	0.30	-1.1
3,207,752	-		BPHYT_RS33950	0.30	+0.9
3,207,752	-		BPHYT_RS33950	0.30	-1.1
3,207,752	-		BPHYT_RS33950	0.30	-0.6
3,207,754	-		BPHYT_RS33950	0.30	+1.2
3,207,754	-		BPHYT_RS33950	0.30	-1.1
3,207,861	-		BPHYT_RS33950	0.43	-0.3