Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33860 and BPHYT_RS33865 are separated by 80 nucleotides BPHYT_RS33865 and BPHYT_RS33870 are separated by 50 nucleotides BPHYT_RS33870 and BPHYT_RS33875 are separated by 11 nucleotides
BPHYT_RS33860: BPHYT_RS33860 - acetyl-CoA carboxylase carboxyl transferase subunit beta, at 3,188,745 to 3,189,617
_RS33860
BPHYT_RS33865: BPHYT_RS33865 - tryptophan synthase alpha chain, at 3,189,698 to 3,190,510
_RS33865
BPHYT_RS33870: BPHYT_RS33870 - DNA methylase N-4, at 3,190,561 to 3,191,466
_RS33870
BPHYT_RS33875: BPHYT_RS33875 - tryptophan synthase subunit alpha, at 3,191,478 to 3,192,671
_RS33875
Position (kb) 3189
3190
3191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3189.693 kb on - strand at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.993 kb on + strand, within BPHYT_RS33865 at 3189.993 kb on + strand, within BPHYT_RS33865 at 3190.024 kb on + strand, within BPHYT_RS33865 at 3190.099 kb on + strand, within BPHYT_RS33865 at 3190.466 kb on - strand at 3190.502 kb on - strand at 3190.515 kb on + strand at 3190.515 kb on + strand at 3190.881 kb on - strand, within BPHYT_RS33870 at 3190.881 kb on - strand, within BPHYT_RS33870 at 3190.899 kb on + strand, within BPHYT_RS33870 at 3190.900 kb on - strand, within BPHYT_RS33870 at 3190.900 kb on - strand, within BPHYT_RS33870 at 3191.153 kb on + strand, within BPHYT_RS33870 at 3191.184 kb on + strand, within BPHYT_RS33870 at 3191.255 kb on + strand, within BPHYT_RS33870 at 3191.255 kb on + strand, within BPHYT_RS33870 at 3191.288 kb on - strand, within BPHYT_RS33870 at 3191.323 kb on + strand, within BPHYT_RS33870 at 3191.324 kb on - strand, within BPHYT_RS33870
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 3,189,693 - +1.5 3,189,984 + BPHYT_RS33865 0.35 -1.6 3,189,984 + BPHYT_RS33865 0.35 -3.1 3,189,984 + BPHYT_RS33865 0.35 -1.6 3,189,985 - BPHYT_RS33865 0.35 -1.6 3,189,985 - BPHYT_RS33865 0.35 -2.6 3,189,985 - BPHYT_RS33865 0.35 -3.4 3,189,985 - BPHYT_RS33865 0.35 -1.1 3,189,985 - BPHYT_RS33865 0.35 -1.1 3,189,988 - BPHYT_RS33865 0.36 -2.4 3,189,988 - BPHYT_RS33865 0.36 -3.0 3,189,988 - BPHYT_RS33865 0.36 -2.1 3,189,993 + BPHYT_RS33865 0.36 -2.2 3,189,993 + BPHYT_RS33865 0.36 -2.6 3,190,024 + BPHYT_RS33865 0.40 -3.1 3,190,099 + BPHYT_RS33865 0.49 -0.1 3,190,466 - -0.3 3,190,502 - +2.3 3,190,515 + -3.7 3,190,515 + -3.2 3,190,881 - BPHYT_RS33870 0.35 +1.9 3,190,881 - BPHYT_RS33870 0.35 -1.1 3,190,899 + BPHYT_RS33870 0.37 -0.2 3,190,900 - BPHYT_RS33870 0.37 +0.9 3,190,900 - BPHYT_RS33870 0.37 +0.2 3,191,153 + BPHYT_RS33870 0.65 -0.6 3,191,184 + BPHYT_RS33870 0.69 +0.7 3,191,255 + BPHYT_RS33870 0.77 +0.5 3,191,255 + BPHYT_RS33870 0.77 -1.3 3,191,288 - BPHYT_RS33870 0.80 +0.9 3,191,323 + BPHYT_RS33870 0.84 -1.1 3,191,324 - BPHYT_RS33870 0.84 +0.5
Or see this region's nucleotide sequence