Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33695

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,141,740	+		BPHYT_RS33685	0.70	+0.5
3,141,740	+		BPHYT_RS33685	0.70	-0.8
3,141,740	+		BPHYT_RS33685	0.70	+0.1
3,141,740	+		BPHYT_RS33685	0.70	-1.0
3,141,741	-		BPHYT_RS33685	0.70	+0.1
3,141,950	+				+0.5
3,141,950	+				-0.4
3,142,180	+		BPHYT_RS33690	0.27	-0.0
3,142,181	-		BPHYT_RS33690	0.27	+0.5
3,142,656	-				+1.0
3,142,656	-				-0.6
3,142,672	+				+0.4
3,142,672	+				-0.5
3,142,672	+				+0.3
3,142,673	-				+1.0
3,142,673	-				+0.5
3,142,768	-		BPHYT_RS33695	0.14	+2.0
3,142,937	+		BPHYT_RS33695	0.38	-1.4
3,143,040	-		BPHYT_RS33695	0.52	-0.8
3,143,355	-				-0.2
3,143,420	-				-0.7
3,143,881	+		BPHYT_RS33700	0.57	-0.5
3,143,882	-		BPHYT_RS33700	0.57	+0.0
3,144,069	-		BPHYT_RS33700	0.80	+0.6
3,144,069	-		BPHYT_RS33700	0.80	-0.0
3,144,069	-		BPHYT_RS33700	0.80	-0.4
3,144,281	-				-0.9
3,144,282	+				+0.2
3,144,283	-				+1.0
3,144,283	-				-0.0