Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33645

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,132,317	-				+0.1
3,132,342	+				-0.3
3,132,342	+				+0.2
3,132,360	-				-0.7
3,132,461	+				-2.5
3,132,513	+				+0.9
3,132,513	+				+0.4
3,132,513	+				+0.1
3,132,738	+		BPHYT_RS33640	0.53	+1.0
3,132,918	+				+0.5
3,133,202	-				+1.0
3,133,288	+		BPHYT_RS33645	0.14	-3.7
3,133,288	+		BPHYT_RS33645	0.14	-2.5
3,133,336	+		BPHYT_RS33645	0.19	-0.0
3,133,546	+		BPHYT_RS33645	0.40	-1.0
3,133,808	-		BPHYT_RS33645	0.66	+1.0
3,134,017	+		BPHYT_RS33645	0.87	-5.2
3,134,017	+		BPHYT_RS33645	0.87	-5.9
3,134,027	-		BPHYT_RS33645	0.88	+1.0
3,134,108	+				+0.8
3,134,854	-		BPHYT_RS33650	0.89	+1.0
3,134,875	-				-1.9
3,135,048	+				-1.9
3,135,048	+				-0.1
3,135,048	+				-1.0