Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33535

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,106,962	+				-1.4
3,107,016	+				+1.3
3,107,016	+				-0.9
3,107,017	-				-0.2
3,107,042	-				+1.7
3,107,165	+		BPHYT_RS33525	0.60	+0.0
3,107,192	+		BPHYT_RS33525	0.73	+0.5
3,107,193	-		BPHYT_RS33525	0.74	+0.3
3,107,193	-		BPHYT_RS33525	0.74	+0.4
3,107,193	-		BPHYT_RS33525	0.74	-0.7
3,107,259	+				-0.8
3,107,265	+				+1.1
3,107,265	+				+0.5
3,107,266	-				+1.5
3,107,266	-				+0.9
3,107,266	-				+1.4
3,107,266	-				+1.1
3,107,286	-				+0.9
3,107,342	+				+0.9
3,107,343	-				+0.6
3,107,454	-				+0.2
3,107,481	-				+1.2
3,107,506	+				+4.3
3,107,527	+				+1.8
3,107,574	+				+1.1
3,107,574	+				+0.5
3,107,575	-				+0.0
3,107,583	+				+0.7
3,107,583	+				+2.7
3,107,583	+				+0.8
3,107,583	+				-0.7
3,107,584	-				+0.3
3,107,784	-				+0.4
3,107,804	-				+0.5
3,107,804	-				+0.5
3,107,874	+				+0.7
3,107,874	+				+0.2
3,107,874	+				+1.2
3,107,874	+				+0.2
3,107,875	-				+0.1
3,107,875	-				+0.5
3,107,875	-				+0.1
3,107,875	-				+0.3
3,108,431	+		BPHYT_RS33535	0.26	-5.1
3,108,431	+		BPHYT_RS33535	0.26	-3.1
3,108,432	-		BPHYT_RS33535	0.26	-6.9
3,108,460	+		BPHYT_RS33535	0.27	-2.7
3,108,460	+				-0.6
3,108,460	+		BPHYT_RS33535	0.27	-5.6
3,108,460	+		BPHYT_RS33535	0.27	-4.5
3,108,460	+		BPHYT_RS33535	0.27	-3.9
3,108,461	-		BPHYT_RS33535	0.27	-0.6
3,108,461	-		BPHYT_RS33535	0.27	-1.3
3,108,461	-		BPHYT_RS33535	0.27	-3.7
3,108,461	-		BPHYT_RS33535	0.27	-2.1
3,108,461	-		BPHYT_RS33535	0.27	-4.4
3,108,476	-		BPHYT_RS33535	0.28	-4.7
3,108,568	+		BPHYT_RS33535	0.32	-4.0
3,108,569	-		BPHYT_RS33535	0.33	-4.0
3,108,741	-		BPHYT_RS33535	0.41	-5.1
3,108,772	+		BPHYT_RS33535	0.42	-4.7
3,108,772	+		BPHYT_RS33535	0.42	-2.4
3,108,772	+		BPHYT_RS33535	0.42	-4.3
3,108,773	-		BPHYT_RS33535	0.42	-5.2
3,108,773	-		BPHYT_RS33535	0.42	-3.0
3,108,773	-		BPHYT_RS33535	0.42	-4.8
3,108,798	-		BPHYT_RS33535	0.44	-4.3
3,108,956	+		BPHYT_RS33535	0.51	-3.5
3,109,015	+		BPHYT_RS33535	0.54	-5.7
3,109,030	+		BPHYT_RS33535	0.55	-3.7
3,109,030	+		BPHYT_RS33535	0.55	-3.5
3,109,030	+		BPHYT_RS33535	0.55	-1.0
3,109,031	-		BPHYT_RS33535	0.55	-1.7
3,109,134	-		BPHYT_RS33535	0.60	-4.4
3,109,460	+		BPHYT_RS33535	0.76	-4.4
3,109,460	+		BPHYT_RS33535	0.76	-2.7
3,109,461	-		BPHYT_RS33535	0.76	-5.4
3,109,461	-		BPHYT_RS33535	0.76	-4.4
3,109,462	+		BPHYT_RS33535	0.76	-2.2
3,109,462	+		BPHYT_RS33535	0.76	-5.3
3,109,462	+		BPHYT_RS33535	0.76	-5.1
3,109,462	+		BPHYT_RS33535	0.76	-4.2
3,109,462	+		BPHYT_RS33535	0.76	-3.5
3,109,462	+		BPHYT_RS33535	0.76	-2.2
3,109,462	+		BPHYT_RS33535	0.76	-5.4
3,109,462	+		BPHYT_RS33535	0.76	-4.7
3,109,462	+		BPHYT_RS33535	0.76	-1.8
3,109,462	+		BPHYT_RS33535	0.76	-6.8
3,109,462	+		BPHYT_RS33535	0.76	-3.3
3,109,462	+		BPHYT_RS33535	0.76	-3.1
3,109,462	+		BPHYT_RS33535	0.76	-3.0
3,109,462	+		BPHYT_RS33535	0.76	-6.2
3,109,463	-		BPHYT_RS33535	0.76	-1.7
3,109,463	-		BPHYT_RS33535	0.76	-3.8
3,109,463	-		BPHYT_RS33535	0.76	-2.5
3,109,609	+		BPHYT_RS33535	0.83	-3.9
3,109,705	+		BPHYT_RS33535	0.88	+0.1
3,109,706	-		BPHYT_RS33535	0.88	-3.8
3,109,924	+				-5.1
3,109,926	+				-4.1
3,109,927	-				-3.7
3,109,970	+				-4.2
3,110,035	-				+0.2
3,110,106	+				-4.5
3,110,106	+				-2.4
3,110,180	+		BPHYT_RS33540	0.36	-6.8
3,110,180	+		BPHYT_RS33540	0.36	-2.6
3,110,180	+		BPHYT_RS33540	0.36	-3.7
3,110,218	-		BPHYT_RS33540	0.52	-2.4
3,110,370	+				-3.1
3,110,370	+				-4.6
3,110,370	+				+1.0
3,110,370	+				-3.5
3,110,370	+				-3.3
3,110,371	-				-0.4
3,110,371	-				+0.6
3,110,374	-				-0.9
3,110,374	-				-0.3