Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33440

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,088,664	-		BPHYT_RS33435	0.36	-0.2
3,088,670	+		BPHYT_RS33435	0.36	-2.9
3,088,670	+		BPHYT_RS33435	0.36	-1.9
3,088,671	-		BPHYT_RS33435	0.36	+0.2
3,088,671	-		BPHYT_RS33435	0.36	+0.4
3,088,671	-		BPHYT_RS33435	0.36	+0.6
3,089,089	-		BPHYT_RS33435	0.76	-0.3
3,089,089	-		BPHYT_RS33435	0.76	+0.1
3,089,332	+				-2.2
3,089,369	-				+1.3
3,089,435	-				-0.9
3,089,630	-		BPHYT_RS33440	0.12	+0.1
3,089,630	-		BPHYT_RS33440	0.12	+0.2
3,089,708	+		BPHYT_RS33440	0.20	-1.1
3,089,708	+		BPHYT_RS33440	0.20	+2.3
3,089,708	+		BPHYT_RS33440	0.20	-0.3
3,089,709	-		BPHYT_RS33440	0.20	-3.1
3,089,709	-		BPHYT_RS33440	0.20	-2.5
3,090,303	-		BPHYT_RS33440	0.86	-1.3
3,090,305	+		BPHYT_RS33440	0.86	+1.7
3,090,305	+		BPHYT_RS33440	0.86	+0.6
3,090,306	-		BPHYT_RS33440	0.86	+0.8
3,090,306	-		BPHYT_RS33440	0.86	-0.2
3,090,306	-		BPHYT_RS33440	0.86	-1.5
3,090,824	+		BPHYT_RS33445	0.32	-0.6
3,090,825	-		BPHYT_RS33445	0.32	+0.5
3,090,825	-		BPHYT_RS33445	0.32	-1.0
3,090,825	-				-0.0
3,091,172	+		BPHYT_RS33445	0.63	-2.1
3,091,172	+		BPHYT_RS33445	0.63	+0.7
3,091,172	+		BPHYT_RS33445	0.63	-0.8
3,091,173	-		BPHYT_RS33445	0.63	-0.2
3,091,173	-		BPHYT_RS33445	0.63	-0.3
3,091,176	+		BPHYT_RS33445	0.63	+0.5
3,091,176	+		BPHYT_RS33445	0.63	-1.3
3,091,176	+		BPHYT_RS33445	0.63	+0.1
3,091,177	-		BPHYT_RS33445	0.63	-1.6
3,091,177	-		BPHYT_RS33445	0.63	+1.0
3,091,177	-		BPHYT_RS33445	0.63	-0.0
3,091,378	-		BPHYT_RS33445	0.81	+0.1
3,091,425	+		BPHYT_RS33445	0.85	-0.4