Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33425

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,083,783	+		BPHYT_RS33420	0.42	+0.2
3,083,783	+		BPHYT_RS33420	0.42	+0.1
3,083,784	-		BPHYT_RS33420	0.42	+1.5
3,083,800	+		BPHYT_RS33420	0.46	-2.5
3,083,801	-		BPHYT_RS33420	0.46	+0.4
3,083,843	-		BPHYT_RS33420	0.55	+0.9
3,083,855	-		BPHYT_RS33420	0.58	+0.5
3,083,954	-		BPHYT_RS33420	0.80	+0.1
3,083,954	-		BPHYT_RS33420	0.80	-1.4
3,083,954	-		BPHYT_RS33420	0.80	+0.4
3,083,954	-		BPHYT_RS33420	0.80	+2.0
3,083,964	-		BPHYT_RS33420	0.82	+0.3
3,083,964	-		BPHYT_RS33420	0.82	+0.7
3,084,054	-				-1.8
3,084,144	-				-0.5
3,084,230	-				-0.6
3,084,303	+				-0.8
3,084,327	+				+0.3
3,084,330	+				-0.5
3,085,051	+		BPHYT_RS33425	0.73	+1.1
3,085,052	-		BPHYT_RS33425	0.73	+2.2
3,085,064	-		BPHYT_RS33425	0.75	+0.3
3,085,223	-				+0.6
3,085,223	-				+0.2
3,085,295	-				+0.0
3,085,398	-				-1.3
3,085,757	-		BPHYT_RS33430	0.17	+3.6
3,085,886	+		BPHYT_RS33430	0.21	-2.2
3,086,019	+		BPHYT_RS33430	0.25	-0.9
3,086,020	-		BPHYT_RS33430	0.25	+0.1