Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33415

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,081,940	-		BPHYT_RS33410	0.82	+1.4
3,082,327	-				-1.3
3,082,457	+				+0.2
3,082,458	-				-0.1
3,082,458	-				+0.2
3,082,458	-				+0.7
3,082,458	-				-2.0
3,082,503	+				-2.1
3,082,504	-				+0.0
3,082,508	+				+0.1
3,082,508	+				+1.9
3,082,508	+				-1.0
3,082,542	+				+0.8
3,082,549	+				+1.3
3,082,550	-				+0.2
3,082,550	-				+0.3
3,082,560	+				+1.1
3,082,560	+				-0.8
3,082,561	-				-0.4
3,082,636	-				-0.8
3,082,637	+				-0.8
3,082,683	-				-0.6
3,082,763	-				-0.4
3,082,763	-				+0.1
3,082,815	-				-0.5
3,083,313	+		BPHYT_RS33415	0.77	-0.4
3,083,314	-		BPHYT_RS33415	0.77	+1.3
3,083,314	-		BPHYT_RS33415	0.77	+0.4
3,083,314	-		BPHYT_RS33415	0.77	+1.2
3,083,387	+		BPHYT_RS33415	0.88	-0.6
3,083,783	+		BPHYT_RS33420	0.42	+0.2
3,083,783	+		BPHYT_RS33420	0.42	+0.1
3,083,784	-		BPHYT_RS33420	0.42	+1.5
3,083,800	+		BPHYT_RS33420	0.46	-2.5
3,083,801	-		BPHYT_RS33420	0.46	+0.4
3,083,843	-		BPHYT_RS33420	0.55	+0.9
3,083,855	-		BPHYT_RS33420	0.58	+0.5
3,083,954	-		BPHYT_RS33420	0.80	+0.1
3,083,954	-		BPHYT_RS33420	0.80	-1.4
3,083,954	-		BPHYT_RS33420	0.80	+0.4
3,083,954	-		BPHYT_RS33420	0.80	+2.0
3,083,964	-		BPHYT_RS33420	0.82	+0.3
3,083,964	-		BPHYT_RS33420	0.82	+0.7
3,084,054	-				-1.8
3,084,144	-				-0.5
3,084,230	-				-0.6
3,084,303	+				-0.8
3,084,327	+				+0.3
3,084,330	+				-0.5