Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33410

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,078,635	+		BPHYT_RS33405	0.12	-0.1
3,078,636	-		BPHYT_RS33405	0.12	+0.2
3,078,665	+		BPHYT_RS33405	0.15	-1.3
3,078,792	+		BPHYT_RS33405	0.27	-1.3
3,078,792	+		BPHYT_RS33405	0.27	-0.0
3,078,878	+		BPHYT_RS33405	0.36	+0.3
3,078,878	+		BPHYT_RS33405	0.36	-0.7
3,078,879	-		BPHYT_RS33405	0.36	-1.7
3,078,955	+		BPHYT_RS33405	0.43	-1.8
3,078,997	+		BPHYT_RS33405	0.47	-0.6
3,078,998	-		BPHYT_RS33405	0.47	+0.3
3,079,010	+		BPHYT_RS33405	0.49	-0.6
3,079,011	-		BPHYT_RS33405	0.49	+0.7
3,079,184	+		BPHYT_RS33405	0.65	+0.3
3,079,446	-				+1.0
3,079,446	-				-1.6
3,079,535	+				-1.0
3,080,502	+		BPHYT_RS33410	0.31	+0.1
3,080,503	-		BPHYT_RS33410	0.31	-1.6
3,080,545	-		BPHYT_RS33410	0.33	-0.7
3,080,608	-		BPHYT_RS33410	0.35	+0.7
3,080,881	-		BPHYT_RS33410	0.45	+1.9
3,081,124	-		BPHYT_RS33410	0.53	-0.3
3,081,143	+		BPHYT_RS33410	0.54	+0.4
3,081,144	-		BPHYT_RS33410	0.54	-0.1
3,081,552	+		BPHYT_RS33410	0.68	+0.2
3,081,572	+		BPHYT_RS33410	0.69	+0.5
3,081,710	+		BPHYT_RS33410	0.74	-1.3
3,081,940	-		BPHYT_RS33410	0.82	+1.4
3,082,327	-				-1.3
3,082,457	+				+0.2
3,082,458	-				-0.1
3,082,458	-				+0.2
3,082,458	-				+0.7
3,082,458	-				-2.0
3,082,503	+				-2.1
3,082,504	-				+0.0
3,082,508	+				+0.1
3,082,508	+				+1.9
3,082,508	+				-1.0
3,082,542	+				+0.8
3,082,549	+				+1.3
3,082,550	-				+0.2
3,082,550	-				+0.3
3,082,560	+				+1.1
3,082,560	+				-0.8
3,082,561	-				-0.4
3,082,636	-				-0.8
3,082,637	+				-0.8
3,082,683	-				-0.6
3,082,763	-				-0.4
3,082,763	-				+0.1
3,082,815	-				-0.5
3,083,313	+		BPHYT_RS33415	0.77	-0.4
3,083,314	-		BPHYT_RS33415	0.77	+1.3
3,083,314	-		BPHYT_RS33415	0.77	+0.4
3,083,314	-		BPHYT_RS33415	0.77	+1.2
3,083,387	+		BPHYT_RS33415	0.88	-0.6