Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33285

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,048,596	-		BPHYT_RS33275	0.73	+0.0
3,048,619	+		BPHYT_RS33275	0.74	+0.5
3,048,619	+		BPHYT_RS33275	0.74	-1.2
3,048,620	-		BPHYT_RS33275	0.74	-0.1
3,048,820	+		BPHYT_RS33275	0.86	+1.0
3,048,820	+		BPHYT_RS33275	0.86	+0.3
3,048,821	-		BPHYT_RS33275	0.86	-0.8
3,048,821	-		BPHYT_RS33275	0.86	+0.4
3,049,283	-		BPHYT_RS33280	0.37	-1.3
3,049,444	+				-1.8
3,049,445	-				-1.1
3,049,509	+				+0.2
3,049,509	+				-1.0
3,049,510	-				+0.2
3,049,751	-		BPHYT_RS33285	0.36	+1.3
3,049,869	+		BPHYT_RS33285	0.50	+0.1
3,049,870	-		BPHYT_RS33285	0.51	+0.1
3,049,870	-		BPHYT_RS33285	0.51	+0.3
3,049,870	-		BPHYT_RS33285	0.51	+1.3
3,049,870	-		BPHYT_RS33285	0.51	+0.2
3,049,870	-		BPHYT_RS33285	0.51	+0.8
3,049,870	-		BPHYT_RS33285	0.51	-1.2
3,050,073	+		BPHYT_RS33285	0.76	+0.3
3,050,073	+		BPHYT_RS33285	0.76	+2.2
3,050,112	+		BPHYT_RS33285	0.80	-0.9
3,050,113	-		BPHYT_RS33285	0.81	+0.1
3,050,113	-		BPHYT_RS33285	0.81	-1.6
3,050,227	-				-0.2
3,050,261	-				+0.2
3,050,323	+				-0.5
3,050,324	-				+0.5
3,050,359	+		BPHYT_RS33290	0.11	-0.1
3,050,359	+		BPHYT_RS33290	0.11	+0.4
3,050,558	+		BPHYT_RS33290	0.33	+1.3
3,050,726	-		BPHYT_RS33290	0.52	-0.7
3,051,055	+		BPHYT_RS33290	0.89	-0.6