Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32690

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,909,696	+		BPHYT_RS32685	0.34	+0.7
2,909,697	-		BPHYT_RS32685	0.34	+0.2
2,909,759	+		BPHYT_RS32685	0.39	-0.8
2,910,029	+		BPHYT_RS32685	0.62	+0.2
2,910,030	-		BPHYT_RS32685	0.62	-0.3
2,910,197	+		BPHYT_RS32685	0.77	-1.0
2,910,198	-		BPHYT_RS32685	0.77	+0.5
2,910,198	-		BPHYT_RS32685	0.77	+0.5
2,910,198	-		BPHYT_RS32685	0.77	+0.6
2,910,390	-				-0.5
2,910,390	-				-0.2
2,910,778	-		BPHYT_RS32690	0.32	-0.7
2,910,778	-		BPHYT_RS32690	0.32	-1.7
2,911,297	+				+1.2
2,911,369	-				+0.4
2,911,375	-				-1.8
2,911,386	+				-0.0
2,911,387	-				+0.6
2,911,397	+				-1.3
2,911,522	+				+0.4
2,911,598	+				+0.5
2,911,598	+				-0.2
2,911,598	+				-0.0
2,911,642	+				-1.0
2,911,663	+				-0.3
2,911,664	-				+1.6
2,911,664	-				-0.2
2,911,664	-				-0.2
2,911,686	+				-1.7
2,911,931	+		BPHYT_RS32695	0.36	-1.1
2,911,937	+		BPHYT_RS32695	0.37	-0.0
2,911,938	-		BPHYT_RS32695	0.37	-0.0
2,912,071	+		BPHYT_RS32695	0.53	-1.6
2,912,116	-		BPHYT_RS32695	0.59	+0.3
2,912,141	+		BPHYT_RS32695	0.62	+0.5
2,912,165	+		BPHYT_RS32695	0.65	-1.1
2,912,166	-		BPHYT_RS32695	0.65	+1.4