Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32675

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,905,659	+				+1.1
2,905,768	-				-0.0
2,905,768	-				-0.2
2,905,841	+				+0.7
2,905,884	+				+0.7
2,906,171	+		BPHYT_RS32670	0.41	+1.0
2,906,171	+		BPHYT_RS32670	0.41	+0.2
2,906,171	+		BPHYT_RS32670	0.41	+0.1
2,906,172	-		BPHYT_RS32670	0.41	-0.2
2,906,308	+		BPHYT_RS32670	0.58	+0.8
2,906,308	+		BPHYT_RS32670	0.58	+0.7
2,906,309	-		BPHYT_RS32670	0.58	+2.3
2,906,315	-				+0.0
2,906,370	+		BPHYT_RS32670	0.65	-0.5
2,906,628	-				+1.8
2,906,819	+		BPHYT_RS32675	0.12	+0.6
2,907,341	+		BPHYT_RS32675	0.50	-0.7
2,907,941	-				-0.7
2,908,183	+				+0.9
2,908,184	-				-2.2
2,908,250	+		BPHYT_RS32680	0.12	-0.3
2,908,599	+		BPHYT_RS32680	0.42	-1.4
2,908,600	-		BPHYT_RS32680	0.42	-1.6
2,908,704	-		BPHYT_RS32680	0.50	+0.0
2,908,773	+		BPHYT_RS32680	0.56	-1.9
2,908,878	+		BPHYT_RS32680	0.65	+1.0
2,908,948	-		BPHYT_RS32680	0.71	-0.8
2,909,018	+		BPHYT_RS32680	0.77	-1.0
2,909,018	+		BPHYT_RS32680	0.77	+0.3
2,909,019	-		BPHYT_RS32680	0.77	+1.6
2,909,019	-		BPHYT_RS32680	0.77	+0.5