Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32660

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,902,803	-		BPHYT_RS32655	0.53	-0.2
2,902,963	+		BPHYT_RS32655	0.71	+0.5
2,903,072	-		BPHYT_RS32655	0.83	+0.1
2,903,206	-				-0.4
2,903,363	-				+3.1
2,903,427	+				-1.2
2,903,427	+				-1.8
2,903,428	-				-0.9
2,903,681	+				+0.1
2,904,322	-				+0.4
2,904,494	-		BPHYT_RS32665	0.20	+0.7
2,904,521	+		BPHYT_RS32665	0.22	+1.0
2,904,521	+		BPHYT_RS32665	0.22	+1.0
2,904,523	+		BPHYT_RS32665	0.22	-0.5
2,904,523	+		BPHYT_RS32665	0.22	-1.6
2,904,523	+		BPHYT_RS32665	0.22	-0.3
2,904,524	-		BPHYT_RS32665	0.22	-0.6
2,904,524	-		BPHYT_RS32665	0.22	-0.3
2,904,781	+		BPHYT_RS32665	0.41	+0.4
2,904,909	+		BPHYT_RS32665	0.50	-1.1