Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32610

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,885,331	+		BPHYT_RS32600	0.74	+1.0
2,885,331	+		BPHYT_RS32600	0.74	+0.9
2,885,332	-		BPHYT_RS32600	0.74	+0.4
2,885,332	-		BPHYT_RS32600	0.74	+0.8
2,885,380	+		BPHYT_RS32600	0.84	-0.4
2,885,380	+		BPHYT_RS32600	0.84	+7.4
2,885,383	+		BPHYT_RS32600	0.85	-0.1
2,885,384	-		BPHYT_RS32600	0.85	+0.0
2,885,421	-				+2.6
2,885,626	-				+0.4
2,885,854	-		BPHYT_RS32605	0.15	+0.4
2,885,898	+		BPHYT_RS32605	0.27	-0.6
2,885,899	-		BPHYT_RS32605	0.28	+0.6
2,885,899	-		BPHYT_RS32605	0.28	+1.4
2,886,028	-		BPHYT_RS32605	0.64	-0.0
2,886,447	+		BPHYT_RS32610	0.19	+0.4
2,886,451	-		BPHYT_RS32610	0.20	-0.7
2,886,459	+		BPHYT_RS32610	0.21	-0.8
2,886,460	-		BPHYT_RS32610	0.21	+0.7
2,886,460	-		BPHYT_RS32610	0.21	+1.0
2,886,468	+		BPHYT_RS32610	0.22	+0.4
2,886,468	+		BPHYT_RS32610	0.22	-0.6
2,886,472	+		BPHYT_RS32610	0.22	+0.8
2,886,473	-		BPHYT_RS32610	0.22	+0.8
2,886,498	+		BPHYT_RS32610	0.26	+1.2
2,886,499	-		BPHYT_RS32610	0.26	+0.1
2,886,499	-		BPHYT_RS32610	0.26	+0.3
2,886,513	+		BPHYT_RS32610	0.27	+0.9
2,886,513	+		BPHYT_RS32610	0.27	+1.2
2,886,685	-		BPHYT_RS32610	0.49	+0.5
2,886,685	-		BPHYT_RS32610	0.49	+0.7
2,886,693	-		BPHYT_RS32610	0.50	+0.3
2,886,813	-		BPHYT_RS32610	0.65	+1.0
2,886,813	-		BPHYT_RS32610	0.65	+0.6
2,886,941	-		BPHYT_RS32610	0.81	+0.2
2,886,943	-		BPHYT_RS32610	0.82	+1.2
2,887,286	+				+1.0
2,887,287	-		BPHYT_RS32615	0.17	-0.1
2,887,315	+		BPHYT_RS32615	0.20	+0.9
2,887,337	+		BPHYT_RS32615	0.23	+1.6
2,887,337	+		BPHYT_RS32615	0.23	+0.4
2,887,337	+		BPHYT_RS32615	0.23	+0.4
2,887,338	-		BPHYT_RS32615	0.23	+0.5
2,887,338	-		BPHYT_RS32615	0.23	+0.4
2,887,549	+		BPHYT_RS32615	0.47	-0.7
2,887,657	+		BPHYT_RS32615	0.59	+1.1
2,887,751	-		BPHYT_RS32615	0.69	-1.0