Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32525

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,868,247	+		BPHYT_RS32520	0.64	+1.3
2,868,437	+		BPHYT_RS32520	0.86	+2.0
2,868,438	-		BPHYT_RS32520	0.86	+1.2
2,868,646	-				-1.5
2,868,651	+				+0.2
2,868,652	-				+2.0
2,869,140	+				+1.2
2,869,186	+				+0.3
2,869,206	-				-1.0
2,869,232	+				-0.2
2,869,233	-				-0.1
2,869,233	-				+1.0
2,869,340	-		BPHYT_RS32525	0.26	-1.2
2,869,408	+		BPHYT_RS32525	0.40	-1.0
2,869,641	-				+0.5
2,869,670	-				+2.6
2,869,670	-				-1.1
2,869,673	+				+0.3
2,869,866	-				-1.6
2,869,889	+				-1.6
2,869,900	+				-0.2
2,869,979	+				+2.1
2,870,030	+				+0.2
2,870,241	-		BPHYT_RS32530	0.20	+0.5
2,870,558	+		BPHYT_RS32530	0.40	-1.1
2,870,575	+		BPHYT_RS32530	0.41	-1.0
2,870,640	-		BPHYT_RS32530	0.45	-1.0