Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32370

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,832,880	+		BPHYT_RS32365	0.64	-0.5
2,832,880	+		BPHYT_RS32365	0.64	-2.6
2,832,897	-		BPHYT_RS32365	0.66	-0.1
2,833,227	+				-2.5
2,833,380	+				-0.2
2,833,487	+				+0.9
2,833,487	+				-0.3
2,833,487	+				-0.1
2,833,487	+				+1.0
2,833,487	+				-1.4
2,833,488	-				+0.3
2,833,489	+				-1.3
2,833,489	+				+1.0
2,833,490	-				+1.0
2,833,496	+				+1.3
2,833,788	+		BPHYT_RS32370	0.22	+0.7
2,833,921	+				-0.0
2,834,032	+		BPHYT_RS32370	0.49	+0.3
2,834,036	+		BPHYT_RS32370	0.49	-0.1
2,834,036	+		BPHYT_RS32370	0.49	+0.0
2,834,056	-		BPHYT_RS32370	0.51	-2.5
2,834,056	-		BPHYT_RS32370	0.51	-0.6
2,834,056	-		BPHYT_RS32370	0.51	-1.4
2,834,057	+		BPHYT_RS32370	0.52	-0.5
2,834,275	+		BPHYT_RS32370	0.75	-1.0
2,834,276	-		BPHYT_RS32370	0.75	+1.5
2,834,323	+		BPHYT_RS32370	0.81	-2.1
2,834,636	+				-0.7
2,834,637	-				-1.4
2,834,967	+				+2.0
2,834,967	+				+0.3
2,835,025	-				+0.9
2,835,179	-				+0.2
2,835,179	-				+0.4
2,835,269	+				-1.3
2,835,318	+				+0.4
2,835,421	-				-0.9
2,835,421	-				+1.6