Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31525

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,625,969	+		BPHYT_RS31520	0.68	-0.2
2,625,970	-		BPHYT_RS31520	0.68	-0.6
2,625,971	+		BPHYT_RS31520	0.68	-0.3
2,625,972	-		BPHYT_RS31520	0.68	-1.4
2,626,264	-				-3.0
2,626,281	+				-0.1
2,626,281	+				-0.1
2,626,334	+				+0.7
2,626,661	+				-2.0
2,626,807	-		BPHYT_RS31525	0.23	+0.2
2,626,837	+		BPHYT_RS31525	0.33	-1.1
2,626,943	+		BPHYT_RS31525	0.71	-0.6
2,627,063	+				-0.7
2,627,218	-				+2.3
2,627,218	-				+1.4
2,627,497	+				-0.5
2,627,498	-				+0.1
2,627,498	-				-0.4
2,627,498	-				-0.9
2,627,775	-		BPHYT_RS31530	0.49	-0.3
2,627,781	+		BPHYT_RS31530	0.51	+0.9
2,627,783	+		BPHYT_RS31530	0.51	-0.4
2,627,835	+		BPHYT_RS31530	0.70	-3.0
2,627,835	+		BPHYT_RS31530	0.70	-1.1
2,627,835	+		BPHYT_RS31530	0.70	-1.1
2,627,836	-		BPHYT_RS31530	0.70	-0.3
2,627,867	-		BPHYT_RS31530	0.81	-0.9
2,627,867	-		BPHYT_RS31530	0.81	-2.0
2,627,867	-		BPHYT_RS31530	0.81	+0.9
2,627,871	-		BPHYT_RS31530	0.83	-0.1
2,627,999	+				+0.2
2,628,000	-				-1.4
2,628,000	-				+0.3