Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29590

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,191,413	+		BPHYT_RS29585	0.63	+0.3
2,191,624	+		BPHYT_RS29585	0.82	-1.1
2,191,889	-				-0.5
2,191,895	-				+1.3
2,192,116	-				-1.6
2,192,150	-				+1.2
2,192,290	+		BPHYT_RS29590	0.15	-0.4
2,192,670	+		BPHYT_RS29590	0.30	+3.5
2,192,713	-		BPHYT_RS29590	0.32	-0.8
2,192,972	-		BPHYT_RS29590	0.43	+0.4
2,193,103	-		BPHYT_RS29590	0.48	-0.4
2,193,413	-		BPHYT_RS29590	0.61	+0.2
2,193,413	-		BPHYT_RS29590	0.61	+1.1
2,193,804	+		BPHYT_RS29590	0.77	-1.9
2,193,813	+		BPHYT_RS29590	0.77	-1.0
2,193,813	+		BPHYT_RS29590	0.77	-1.8
2,193,813	+		BPHYT_RS29590	0.77	-0.9
2,193,814	-		BPHYT_RS29590	0.77	-0.2
2,193,814	-		BPHYT_RS29590	0.77	-1.2
2,193,864	+		BPHYT_RS29590	0.79	-0.8
2,193,864	+		BPHYT_RS29590	0.79	-2.5
2,194,120	+		BPHYT_RS29590	0.89	-0.2
2,194,155	+				-0.6
2,194,156	-				-1.4
2,194,159	-				+0.4
2,194,159	-				-1.4
2,194,296	+				+1.2
2,194,297	-				-0.7
2,194,297	-				-0.1
2,194,340	-				-1.2
2,194,407	+				-2.5
2,194,688	+				+0.7
2,194,859	+				+1.0
2,194,859	+				+0.2
2,194,860	-				-2.2
2,194,860	-				-1.8
2,194,919	+				+0.7
2,195,278	-		BPHYT_RS29595	0.11	-0.2
2,195,349	+		BPHYT_RS29595	0.16	-1.0
2,195,349	+		BPHYT_RS29595	0.16	-0.9
2,195,350	-		BPHYT_RS29595	0.16	-0.5
2,195,350	-		BPHYT_RS29595	0.16	+0.2
2,195,350	-		BPHYT_RS29595	0.16	-0.2