Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29190

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,103,965	-		BPHYT_RS29185	0.70	-0.0
2,105,096	-		BPHYT_RS29190	0.68	+1.0
2,105,339	+		BPHYT_RS29190	0.88	+0.8
2,105,340	-		BPHYT_RS29190	0.88	+1.2
2,105,341	+		BPHYT_RS29190	0.88	+1.6
2,105,342	-		BPHYT_RS29190	0.88	+0.5
2,105,558	+				+7.8
2,105,559	-				-0.6
2,105,559	-				-2.4
2,105,579	+				-0.5
2,105,677	-				+0.2
2,105,876	+		BPHYT_RS29195	0.21	+0.2
2,105,876	+		BPHYT_RS29195	0.21	+4.6
2,105,877	-		BPHYT_RS29195	0.21	-0.4
2,105,980	+		BPHYT_RS29195	0.28	-1.1
2,106,039	-		BPHYT_RS29195	0.33	+0.0