Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28860

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28855 and BPHYT_RS28860 are separated by 137 nucleotidesBPHYT_RS28860 and BPHYT_RS28865 are separated by 20 nucleotides BPHYT_RS28855: BPHYT_RS28855 - LysR family transcriptional regulator, at 2,024,430 to 2,025,335 _RS28855 BPHYT_RS28860: BPHYT_RS28860 - haloacid dehalogenase, at 2,025,473 to 2,026,144 _RS28860 BPHYT_RS28865: BPHYT_RS28865 - alanine racemase, at 2,026,165 to 2,027,304 _RS28865 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -1 0 1at 2025.406 kb on - strandat 2025.436 kb on - strandat 2026.017 kb on - strand, within BPHYT_RS28860at 2027.094 kb on - strand, within BPHYT_RS28865

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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2,025,406 - -0.7
2,025,436 - +0.3
2,026,017 - BPHYT_RS28860 0.81 +0.3
2,027,094 - BPHYT_RS28865 0.81 +0.4

Or see this region's nucleotide sequence