Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28725

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,996,596	-				+0.9
1,996,647	+				+0.6
1,996,648	-				+0.2
1,996,854	+		BPHYT_RS28720	0.26	-1.0
1,997,099	+		BPHYT_RS28720	0.55	-1.4
1,997,100	-		BPHYT_RS28720	0.55	+0.5
1,997,105	+		BPHYT_RS28720	0.56	-1.1
1,997,401	+				-2.3
1,997,510	+				+0.0
1,998,023	-		BPHYT_RS28725	0.42	+1.1
1,998,061	+		BPHYT_RS28725	0.46	+0.7
1,998,132	+		BPHYT_RS28725	0.53	+1.2
1,998,352	-		BPHYT_RS28725	0.74	+0.4
1,998,352	-		BPHYT_RS28725	0.74	-0.7
1,998,356	-		BPHYT_RS28725	0.75	+0.7
1,998,451	+		BPHYT_RS28725	0.84	+0.4
1,998,451	+		BPHYT_RS28725	0.84	+2.3
1,998,452	-		BPHYT_RS28725	0.84	+1.4
1,998,725	+				-1.0
1,999,004	+				+1.2
1,999,040	+				+1.2
1,999,041	-				+1.0
1,999,066	+				-0.6
1,999,067	-				+0.6