Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28645

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,980,103	-		BPHYT_RS28640	0.43	+0.5
1,980,103	-		BPHYT_RS28640	0.43	-0.8
1,980,103	-		BPHYT_RS28640	0.43	+0.0
1,980,948	+				+0.0
1,981,075	+				+1.4
1,981,075	+				-2.0
1,981,505	-		BPHYT_RS28645	0.46	-0.6
1,981,698	+		BPHYT_RS28645	0.65	-0.2
1,981,714	+		BPHYT_RS28645	0.67	+0.6
1,981,844	-		BPHYT_RS28645	0.80	-0.4
1,981,844	-		BPHYT_RS28645	0.80	-1.1
1,981,858	-		BPHYT_RS28645	0.81	-2.0
1,981,890	+		BPHYT_RS28645	0.85	-1.5
1,981,891	-		BPHYT_RS28645	0.85	-0.7
1,981,898	+		BPHYT_RS28645	0.85	-0.8
1,981,900	+		BPHYT_RS28645	0.86	+0.7
1,982,046	+				+0.2
1,982,338	-		BPHYT_RS28650	0.76	-2.4
1,982,806	+				+1.4