Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28280

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28275 and BPHYT_RS28280 are separated by 191 nucleotidesBPHYT_RS28280 and BPHYT_RS28285 are separated by 123 nucleotides BPHYT_RS28275: BPHYT_RS28275 - glycerol acyltransferase, at 1,900,169 to 1,900,879 _RS28275 BPHYT_RS28280: BPHYT_RS28280 - hypothetical protein, at 1,901,071 to 1,901,385 _RS28280 BPHYT_RS28285: BPHYT_RS28285 - MFS transporter, at 1,901,509 to 1,902,756 _RS28285 Position (kb) 1901 1902Strain fitness (log2 ratio) -1 0 1 2 3at 1900.273 kb on + strand, within BPHYT_RS28275at 1900.274 kb on - strand, within BPHYT_RS28275at 1900.274 kb on - strand, within BPHYT_RS28275at 1900.850 kb on - strandat 1900.950 kb on + strandat 1900.951 kb on - strandat 1900.951 kb on - strandat 1901.305 kb on + strand, within BPHYT_RS28280at 1901.305 kb on + strand, within BPHYT_RS28280at 1902.026 kb on + strand, within BPHYT_RS28285

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,900,273 + BPHYT_RS28275 0.15 -0.2
1,900,274 - BPHYT_RS28275 0.15 -1.1
1,900,274 - BPHYT_RS28275 0.15 -1.2
1,900,850 - +0.5
1,900,950 + -0.6
1,900,951 - -0.7
1,900,951 - +0.5
1,901,305 + BPHYT_RS28280 0.74 +3.6
1,901,305 + BPHYT_RS28280 0.74 +1.4
1,902,026 + BPHYT_RS28285 0.41 +0.4

Or see this region's nucleotide sequence