Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28145

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,870,985	-		BPHYT_RS28135	0.79	-0.2
1,871,362	+				-0.6
1,871,387	+				-1.2
1,871,388	-				+1.7
1,871,388	-				+1.1
1,871,445	-				-0.1
1,871,670	+		BPHYT_RS28140	0.38	+0.1
1,871,917	+				-0.0
1,871,917	+				-1.2
1,871,918	-				+0.8
1,871,918	-				+0.4
1,872,117	+		BPHYT_RS28145	0.14	-0.2
1,872,118	-		BPHYT_RS28145	0.14	-0.9
1,872,391	-		BPHYT_RS28145	0.37	-0.8
1,872,559	+		BPHYT_RS28145	0.51	-0.8
1,872,560	-		BPHYT_RS28145	0.51	-1.9
1,872,560	-				+1.1
1,872,643	+		BPHYT_RS28145	0.58	-1.0
1,872,781	-		BPHYT_RS28145	0.70	-0.5
1,873,023	+				+4.1
1,873,024	-				+0.8
1,873,101	-				-0.8
1,873,108	+				+1.1
1,873,109	-				-0.3
1,873,152	-				+4.9
1,873,305	-				+1.0
1,873,406	+				+1.8
1,873,407	-				-1.1
1,873,414	-				+0.8
1,873,581	+		BPHYT_RS28150	0.16	-0.7
1,874,007	-		BPHYT_RS28150	0.44	+0.8
1,874,133	-		BPHYT_RS28150	0.53	-0.1