Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28130

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,868,393	+				-0.5
1,868,393	+				+1.1
1,868,394	-				+0.4
1,868,671	+				-0.2
1,868,671	+				-2.2
1,868,672	-				-1.6
1,868,680	-				+2.2
1,868,762	-				+3.1
1,868,780	+				+1.1
1,868,780	+				+0.6
1,868,780	+				+0.7
1,868,780	+				-0.1
1,868,780	+				+1.9
1,868,780	+				-0.8
1,868,781	-				+0.2
1,868,781	-				+0.4
1,869,344	+				+2.1
1,869,348	+				-1.7
1,869,580	-		BPHYT_RS28130	0.30	+0.8
1,869,729	-		BPHYT_RS28130	0.50	+1.3
1,870,003	+		BPHYT_RS28130	0.87	-1.7
1,870,004	-		BPHYT_RS28130	0.87	-0.5
1,870,110	-				-0.2
1,870,830	+		BPHYT_RS28135	0.64	+0.1
1,870,843	-		BPHYT_RS28135	0.65	+1.7
1,870,843	-		BPHYT_RS28135	0.65	+0.1
1,870,985	-		BPHYT_RS28135	0.79	-0.2