Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28045

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,855,310	+		BPHYT_RS28040	0.47	-2.4
1,855,310	+		BPHYT_RS28040	0.47	-1.2
1,855,310	+		BPHYT_RS28040	0.47	-0.9
1,855,641	-		BPHYT_RS28040	0.76	-1.2
1,855,723	+		BPHYT_RS28040	0.83	-0.7
1,855,724	-		BPHYT_RS28040	0.84	-0.5
1,855,897	+				+0.9
1,856,095	+				-1.2
1,856,095	+				+0.4
1,856,096	-				+0.4
1,856,096	-				+1.7
1,856,177	-				-1.2
1,856,181	-				-0.5
1,856,205	+				-1.1
1,856,337	+		BPHYT_RS28045	0.15	+0.7
1,856,338	-		BPHYT_RS28045	0.15	+0.2
1,856,506	+		BPHYT_RS28045	0.31	-0.2
1,856,507	-		BPHYT_RS28045	0.31	-0.9
1,856,761	-		BPHYT_RS28045	0.56	+0.9
1,856,761	-		BPHYT_RS28045	0.56	-1.2
1,856,862	+		BPHYT_RS28045	0.66	-0.4
1,857,008	+		BPHYT_RS28045	0.80	-0.1
1,857,224	-				-0.4
1,857,271	+				+1.1
1,857,711	+		BPHYT_RS28050	0.25	+1.1
1,857,711	+		BPHYT_RS28050	0.25	+1.3
1,857,711	+		BPHYT_RS28050	0.25	+1.7
1,857,711	+		BPHYT_RS28050	0.25	-1.4
1,857,712	-		BPHYT_RS28050	0.25	-0.4
1,857,712	-		BPHYT_RS28050	0.25	-0.9