Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27635

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,767,098	-		BPHYT_RS27625	0.80	-0.1
1,767,249	+				-1.2
1,767,381	-				+0.0
1,767,592	+				+0.6
1,768,015	-		BPHYT_RS27635	0.18	-1.7
1,768,073	-		BPHYT_RS27635	0.23	-1.6
1,768,509	-		BPHYT_RS27635	0.65	-2.4
1,768,509	-		BPHYT_RS27635	0.65	+0.1
1,768,705	-		BPHYT_RS27635	0.84	-0.5
1,768,856	+				-2.8
1,769,230	+				+1.5
1,769,422	-		BPHYT_RS27640	0.16	+1.2
1,769,591	-		BPHYT_RS27640	0.38	-1.9