Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27180

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,674,747	-		BPHYT_RS27175	0.47	+3.4
1,675,248	+				-0.3
1,675,291	+				-0.4
1,675,291	+				+0.5
1,675,305	+				-0.6
1,675,306	-				+0.1
1,675,306	-				-1.3
1,675,306	-				+0.1
1,675,306	-				-0.4
1,675,486	-		BPHYT_RS27180	0.15	-0.9
1,675,874	-		BPHYT_RS27180	0.70	+0.2
1,675,893	+		BPHYT_RS27180	0.73	-0.0
1,675,894	-		BPHYT_RS27180	0.73	-0.8
1,676,142	+				-1.4
1,676,394	-				+1.6
1,676,695	+		BPHYT_RS27185	0.23	+0.0
1,676,748	+		BPHYT_RS27185	0.26	-2.4
1,676,977	+		BPHYT_RS27185	0.41	-0.7
1,676,977	+		BPHYT_RS27185	0.41	-0.4