Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26920

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,612,365	+		BPHYT_RS26915	0.52	+0.1
1,612,621	+		BPHYT_RS26915	0.70	+0.7
1,612,621	+		BPHYT_RS26915	0.70	+0.5
1,612,622	-		BPHYT_RS26915	0.70	+0.1
1,613,055	+				+0.6
1,613,055	+				+0.3
1,613,239	+				+0.3
1,613,239	+				+0.6
1,613,541	+		BPHYT_RS26920	0.15	+0.9
1,614,064	-		BPHYT_RS26920	0.45	+1.4
1,614,241	+		BPHYT_RS26920	0.55	+0.8
1,614,310	-		BPHYT_RS26920	0.59	+0.2
1,614,486	+		BPHYT_RS26920	0.69	+3.8
1,615,072	+				+0.1
1,615,110	+				+0.5
1,615,111	-				+2.9
1,615,114	+				+0.5
1,615,114	+				+1.1
1,615,115	-				+1.2
1,615,115	-				-0.1
1,615,178	-				-0.6
1,615,256	-		BPHYT_RS26925	0.25	+2.1
1,615,310	-		BPHYT_RS26925	0.40	+2.7
1,615,355	+		BPHYT_RS26925	0.53	+2.4
1,615,365	-		BPHYT_RS26925	0.56	-0.1
1,615,871	+				+1.0