Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26875 and BPHYT_RS26880 are separated by 94 nucleotides BPHYT_RS26880 and BPHYT_RS26885 are separated by 123 nucleotides BPHYT_RS26885 and BPHYT_RS26890 are separated by 112 nucleotides
BPHYT_RS26875: BPHYT_RS26875 - procollagen-proline dioxygenase, at 1,601,994 to 1,602,881
_RS26875
BPHYT_RS26880: BPHYT_RS26880 - ketosteroid isomerase, at 1,602,976 to 1,603,467
_RS26880
BPHYT_RS26885: BPHYT_RS26885 - DSBA oxidoreductase, at 1,603,591 to 1,605,156
_RS26885
BPHYT_RS26890: BPHYT_RS26890 - LysR family transcriptional regulator, at 1,605,269 to 1,606,144
_RS26890
Position (kb) 1603
1604
1605
1606 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1602.646 kb on + strand, within BPHYT_RS26875 at 1602.647 kb on - strand at 1602.652 kb on + strand, within BPHYT_RS26875 at 1602.881 kb on + strand at 1602.882 kb on - strand at 1602.882 kb on - strand at 1602.935 kb on - strand at 1602.951 kb on + strand at 1602.951 kb on + strand at 1603.007 kb on + strand at 1603.208 kb on + strand, within BPHYT_RS26880 at 1603.209 kb on - strand, within BPHYT_RS26880 at 1604.187 kb on - strand, within BPHYT_RS26885 at 1604.187 kb on - strand, within BPHYT_RS26885 at 1604.975 kb on + strand, within BPHYT_RS26885 at 1604.975 kb on + strand, within BPHYT_RS26885 at 1605.567 kb on - strand, within BPHYT_RS26890 at 1605.567 kb on - strand, within BPHYT_RS26890 at 1605.584 kb on + strand, within BPHYT_RS26890 at 1605.594 kb on + strand, within BPHYT_RS26890 at 1605.714 kb on - strand, within BPHYT_RS26890
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 1,602,646 + BPHYT_RS26875 0.73 +0.6 1,602,647 - +1.1 1,602,652 + BPHYT_RS26875 0.74 +1.1 1,602,881 + +1.0 1,602,882 - +0.1 1,602,882 - +1.1 1,602,935 - +0.1 1,602,951 + +1.1 1,602,951 + +2.5 1,603,007 + -4.0 1,603,208 + BPHYT_RS26880 0.47 +0.8 1,603,209 - BPHYT_RS26880 0.47 -0.9 1,604,187 - BPHYT_RS26885 0.38 +2.1 1,604,187 - BPHYT_RS26885 0.38 +1.1 1,604,975 + BPHYT_RS26885 0.88 +0.1 1,604,975 + BPHYT_RS26885 0.88 +1.0 1,605,567 - BPHYT_RS26890 0.34 -0.0 1,605,567 - BPHYT_RS26890 0.34 +0.1 1,605,584 + BPHYT_RS26890 0.36 -0.5 1,605,594 + BPHYT_RS26890 0.37 +0.4 1,605,714 - BPHYT_RS26890 0.51 -0.6
Or see this region's nucleotide sequence