Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26100

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26095 and BPHYT_RS26100 are separated by 10 nucleotidesBPHYT_RS26100 and BPHYT_RS26105 are separated by 69 nucleotidesBPHYT_RS26105 and BPHYT_RS26110 overlap by 10 nucleotides BPHYT_RS26095: BPHYT_RS26095 - amidase, at 1,429,914 to 1,431,113 _RS26095 BPHYT_RS26100: BPHYT_RS26100 - gamma-glutamyltransferase, at 1,431,124 to 1,432,710 _RS26100 BPHYT_RS26105: BPHYT_RS26105 - hypothetical protein, at 1,432,780 to 1,433,370 _RS26105 BPHYT_RS26110: BPHYT_RS26110 - GntR family transcriptional regulator, at 1,433,361 to 1,434,113 _RS26110 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -1 0 1 2at 1430.809 kb on + strand, within BPHYT_RS26095at 1431.445 kb on - strand, within BPHYT_RS26100at 1431.445 kb on - strand, within BPHYT_RS26100at 1431.700 kb on - strand, within BPHYT_RS26100at 1431.964 kb on + strand, within BPHYT_RS26100at 1432.299 kb on + strand, within BPHYT_RS26100at 1432.351 kb on + strand, within BPHYT_RS26100at 1432.353 kb on + strand, within BPHYT_RS26100at 1432.354 kb on - strand, within BPHYT_RS26100at 1432.589 kb on + strandat 1432.759 kb on + strandat 1432.847 kb on + strand, within BPHYT_RS26105at 1433.331 kb on - strandat 1433.629 kb on + strand, within BPHYT_RS26110

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,430,809 + BPHYT_RS26095 0.75 +1.8
1,431,445 - BPHYT_RS26100 0.20 -1.6
1,431,445 - BPHYT_RS26100 0.20 -0.3
1,431,700 - BPHYT_RS26100 0.36 +0.1
1,431,964 + BPHYT_RS26100 0.53 +0.4
1,432,299 + BPHYT_RS26100 0.74 -0.7
1,432,351 + BPHYT_RS26100 0.77 -0.8
1,432,353 + BPHYT_RS26100 0.77 -0.2
1,432,354 - BPHYT_RS26100 0.78 -0.2
1,432,589 + -1.1
1,432,759 + +0.2
1,432,847 + BPHYT_RS26105 0.11 +0.0
1,433,331 - -0.2
1,433,629 + BPHYT_RS26110 0.36 +0.6

Or see this region's nucleotide sequence