Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25790

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25785 and BPHYT_RS25790 are separated by 15 nucleotidesBPHYT_RS25790 and BPHYT_RS25795 are separated by 146 nucleotides BPHYT_RS25785: BPHYT_RS25785 - sugar ABC transporter permease, at 1,357,079 to 1,358,137 _RS25785 BPHYT_RS25790: BPHYT_RS25790 - sugar ABC transporter ATP-binding protein, at 1,358,153 to 1,359,655 _RS25790 BPHYT_RS25795: BPHYT_RS25795 - LacI family transcription regulator, at 1,359,802 to 1,360,806 _RS25795 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -1 0 1at 1357.247 kb on - strand, within BPHYT_RS25785at 1357.665 kb on + strand, within BPHYT_RS25785at 1357.666 kb on - strand, within BPHYT_RS25785at 1357.825 kb on - strand, within BPHYT_RS25785at 1358.154 kb on + strandat 1359.821 kb on + strandat 1359.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,357,247 - BPHYT_RS25785 0.16 +1.6
1,357,665 + BPHYT_RS25785 0.55 -1.2
1,357,666 - BPHYT_RS25785 0.55 -1.7
1,357,825 - BPHYT_RS25785 0.70 +1.2
1,358,154 + -0.8
1,359,821 + +0.1
1,359,822 - -1.6

Or see this region's nucleotide sequence