Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25475

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25465 and BPHYT_RS25470 are separated by 26 nucleotidesBPHYT_RS25470 and BPHYT_RS25475 are separated by 115 nucleotidesBPHYT_RS25475 and BPHYT_RS25480 are separated by 173 nucleotidesBPHYT_RS25480 and BPHYT_RS25485 are separated by 91 nucleotides BPHYT_RS25465: BPHYT_RS25465 - 1,2-oxophytodienoate reductase, at 1,291,383 to 1,292,471 _RS25465 BPHYT_RS25470: BPHYT_RS25470 - alkylhydroperoxidase, at 1,292,498 to 1,293,034 _RS25470 BPHYT_RS25475: BPHYT_RS25475 - LysR family transcriptional regulator, at 1,293,150 to 1,294,064 _RS25475 BPHYT_RS25480: BPHYT_RS25480 - hypothetical protein, at 1,294,238 to 1,294,879 _RS25480 BPHYT_RS25485: BPHYT_RS25485 - hypothetical protein, at 1,294,971 to 1,295,750 _RS25485 Position (kb) 1293 1294 1295Strain fitness (log2 ratio) -1 0 1 2at 1292.208 kb on + strand, within BPHYT_RS25465at 1292.342 kb on + strand, within BPHYT_RS25465at 1292.476 kb on - strandat 1292.710 kb on + strand, within BPHYT_RS25470at 1292.711 kb on - strand, within BPHYT_RS25470at 1293.099 kb on - strandat 1293.099 kb on - strandat 1293.139 kb on + strandat 1293.293 kb on - strand, within BPHYT_RS25475at 1294.151 kb on + strandat 1294.353 kb on + strand, within BPHYT_RS25480at 1294.355 kb on + strand, within BPHYT_RS25480at 1294.508 kb on - strand, within BPHYT_RS25480at 1294.511 kb on + strand, within BPHYT_RS25480at 1294.512 kb on - strand, within BPHYT_RS25480

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,292,208 + BPHYT_RS25465 0.76 -0.8
1,292,342 + BPHYT_RS25465 0.88 +2.7
1,292,476 - +0.2
1,292,710 + BPHYT_RS25470 0.39 -1.2
1,292,711 - BPHYT_RS25470 0.40 -1.4
1,293,099 - +0.4
1,293,099 - -1.3
1,293,139 + -0.7
1,293,293 - BPHYT_RS25475 0.16 -0.9
1,294,151 + -1.2
1,294,353 + BPHYT_RS25480 0.18 +0.6
1,294,355 + BPHYT_RS25480 0.18 +0.1
1,294,508 - BPHYT_RS25480 0.42 +0.2
1,294,511 + BPHYT_RS25480 0.43 -0.1
1,294,512 - BPHYT_RS25480 0.43 +0.1

Or see this region's nucleotide sequence