Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25240

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25235 and BPHYT_RS25240 are separated by 163 nucleotidesBPHYT_RS25240 and BPHYT_RS25245 are separated by 51 nucleotides BPHYT_RS25235: BPHYT_RS25235 - LysR family transcriptional regulator, at 1,235,491 to 1,236,405 _RS25235 BPHYT_RS25240: BPHYT_RS25240 - choline-sulfatase, at 1,236,569 to 1,238,107 _RS25240 BPHYT_RS25245: BPHYT_RS25245 - glycine/betaine ABC transporter substrate-binding protein, at 1,238,159 to 1,239,109 _RS25245 Position (kb) 1236 1237 1238 1239Strain fitness (log2 ratio) -1 0 1at 1235.710 kb on - strand, within BPHYT_RS25235at 1236.080 kb on + strand, within BPHYT_RS25235at 1236.427 kb on - strandat 1237.208 kb on + strand, within BPHYT_RS25240at 1237.353 kb on - strand, within BPHYT_RS25240

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,235,710 - BPHYT_RS25235 0.24 -0.3
1,236,080 + BPHYT_RS25235 0.64 -0.4
1,236,427 - +0.6
1,237,208 + BPHYT_RS25240 0.42 -1.2
1,237,353 - BPHYT_RS25240 0.51 +0.3

Or see this region's nucleotide sequence