Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25200

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,228,092	-		BPHYT_RS25200	0.65	-0.9
1,228,317	-		BPHYT_RS25200	0.77	-1.4
1,228,437	-		BPHYT_RS25200	0.83	-1.5
1,228,437	-		BPHYT_RS25200	0.83	+1.3
1,228,463	+		BPHYT_RS25200	0.84	+0.0
1,228,464	-		BPHYT_RS25200	0.85	+0.2
1,229,198	+		BPHYT_RS25205	0.37	-1.4
1,229,198	+		BPHYT_RS25205	0.37	-0.2
1,229,199	-		BPHYT_RS25205	0.37	-0.7
1,229,201	-		BPHYT_RS25205	0.37	-1.7
1,229,316	+		BPHYT_RS25205	0.47	-1.1
1,229,316	+		BPHYT_RS25205	0.47	-3.1
1,229,700	+		BPHYT_RS25205	0.79	+0.8
1,229,700	+		BPHYT_RS25205	0.79	-1.0