Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24960

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,170,641	+		BPHYT_RS24955	0.90	+1.9
1,171,424	+		BPHYT_RS24960	0.25	-0.2
1,171,637	+		BPHYT_RS24960	0.37	+1.6
1,171,743	-		BPHYT_RS24960	0.43	+2.1
1,171,770	-		BPHYT_RS24960	0.44	-0.5
1,172,114	+		BPHYT_RS24960	0.64	+0.4
1,172,115	-		BPHYT_RS24960	0.64	-0.5
1,172,115	-		BPHYT_RS24960	0.64	+0.6
1,172,115	-		BPHYT_RS24960	0.64	+0.2
1,172,127	-		BPHYT_RS24960	0.64	-0.8
1,172,195	+		BPHYT_RS24960	0.68	+1.2
1,172,298	-		BPHYT_RS24960	0.74	+0.2
1,172,340	+		BPHYT_RS24960	0.77	+2.9
1,172,746	-				+0.1
1,172,826	+				+0.7
1,172,827	-				+0.6
1,172,950	+				+0.1
1,173,139	-				-0.1
1,173,363	-		BPHYT_RS24965	0.65	-0.3
1,173,634	+				+0.0
1,173,637	-				+0.5
1,173,649	+				+0.9
1,173,649	+				+1.3