Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24410

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,039,895	+		BPHYT_RS24400	0.79	-0.1
1,040,013	-		BPHYT_RS24400	0.87	-1.4
1,040,230	-				-4.4
1,040,302	+				+0.1
1,040,303	-				+2.1
1,040,307	-				-0.9
1,040,507	-		BPHYT_RS24405	0.43	-1.9
1,040,590	+		BPHYT_RS24405	0.60	+2.7
1,040,591	-		BPHYT_RS24405	0.60	+0.6
1,040,612	-		BPHYT_RS24405	0.64	-4.1
1,040,612	-		BPHYT_RS24405	0.64	-1.1
1,040,683	+		BPHYT_RS24405	0.78	-0.5
1,040,782	+				-0.5
1,041,083	+		BPHYT_RS24410	0.42	+1.4
1,041,326	+				+0.1
1,041,356	+				+0.7
1,041,356	+				+0.4
1,041,868	+		BPHYT_RS24415	0.21	+1.2
1,041,910	+		BPHYT_RS24415	0.23	+0.5
1,041,944	+		BPHYT_RS24415	0.25	-1.8
1,042,111	+		BPHYT_RS24415	0.34	-2.2
1,042,112	-		BPHYT_RS24415	0.34	-0.0
1,042,205	-		BPHYT_RS24415	0.40	-0.2