Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23280 and BPHYT_RS23285 are separated by 25 nucleotides BPHYT_RS23285 and BPHYT_RS23290 are separated by 263 nucleotides BPHYT_RS23290 and BPHYT_RS23295 are separated by 3 nucleotides BPHYT_RS23295 and BPHYT_RS23300 are separated by 52 nucleotides
BPHYT_RS23280: BPHYT_RS23280 - phosphate ABC transporter substrate-binding protein, at 788,183 to 788,974
_RS23280
BPHYT_RS23285: BPHYT_RS23285 - hypothetical protein, at 789,000 to 789,278
_RS23285
BPHYT_RS23290: BPHYT_RS23290 - hypothetical protein, at 789,542 to 789,730
_RS23290
BPHYT_RS23295: BPHYT_RS23295 - O-methyltransferase, at 789,734 to 790,348
_RS23295
BPHYT_RS23300: BPHYT_RS23300 - IclR family transcriptional regulator, at 790,401 to 791,012
_RS23300
Position (kb) 789
790 Strain fitness (log2 ratio) -1
0
1 at 788.615 kb on - strand, within BPHYT_RS23280 at 788.635 kb on - strand, within BPHYT_RS23280 at 788.944 kb on + strand at 788.945 kb on - strand at 788.946 kb on + strand at 788.947 kb on - strand at 789.268 kb on + strand at 789.278 kb on + strand at 789.339 kb on + strand at 789.560 kb on + strand at 790.070 kb on + strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.163 kb on + strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.228 kb on + strand, within BPHYT_RS23295 at 790.229 kb on - strand, within BPHYT_RS23295
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 788,615 - BPHYT_RS23280 0.55 +0.6 788,635 - BPHYT_RS23280 0.57 -0.0 788,944 + +1.6 788,945 - +0.3 788,946 + -0.1 788,947 - -1.3 789,268 + +0.3 789,278 + -0.5 789,339 + -0.0 789,560 + -0.1 790,070 + BPHYT_RS23295 0.55 +0.3 790,071 - BPHYT_RS23295 0.55 -1.4 790,071 - BPHYT_RS23295 0.55 -0.1 790,163 + BPHYT_RS23295 0.70 -0.9 790,164 - BPHYT_RS23295 0.70 +0.8 790,164 - BPHYT_RS23295 0.70 +0.7 790,228 + BPHYT_RS23295 0.80 +0.3 790,229 - BPHYT_RS23295 0.80 -0.3
Or see this region's nucleotide sequence