Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23220

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23215 and BPHYT_RS23220 are separated by 234 nucleotidesBPHYT_RS23220 and BPHYT_RS23225 are separated by 113 nucleotidesBPHYT_RS23225 and BPHYT_RS23230 are separated by 30 nucleotides BPHYT_RS23215: BPHYT_RS23215 - transcriptional regulator, at 773,475 to 774,413 _RS23215 BPHYT_RS23220: BPHYT_RS23220 - hypothetical protein, at 774,648 to 775,379 _RS23220 BPHYT_RS23225: BPHYT_RS23225 - hypothetical protein, at 775,493 to 775,699 _RS23225 BPHYT_RS23230: BPHYT_RS23230 - histidine kinase, at 775,730 to 777,703 _RS23230 Position (kb) 774 775 776Strain fitness (log2 ratio) -2 -1 0 1 2at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.209 kb on - strand, within BPHYT_RS23215at 774.659 kb on - strandat 774.659 kb on - strandat 774.741 kb on + strand, within BPHYT_RS23220at 775.111 kb on - strand, within BPHYT_RS23220at 775.313 kb on + strandat 775.608 kb on - strand, within BPHYT_RS23225at 775.610 kb on + strand, within BPHYT_RS23225at 775.752 kb on + strandat 776.257 kb on - strand, within BPHYT_RS23230

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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774,199 + BPHYT_RS23215 0.77 -0.0
774,199 + BPHYT_RS23215 0.77 -1.6
774,199 + BPHYT_RS23215 0.77 +0.1
774,209 - BPHYT_RS23215 0.78 +0.2
774,659 - -0.8
774,659 - +1.8
774,741 + BPHYT_RS23220 0.13 +0.5
775,111 - BPHYT_RS23220 0.63 +1.2
775,313 + -1.3
775,608 - BPHYT_RS23225 0.56 -2.1
775,610 + BPHYT_RS23225 0.57 -1.0
775,752 + +2.3
776,257 - BPHYT_RS23230 0.27 -1.9

Or see this region's nucleotide sequence