Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23035

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23030 and BPHYT_RS23035 are separated by 367 nucleotidesBPHYT_RS23035 and BPHYT_RS23040 are separated by 26 nucleotides BPHYT_RS23030: BPHYT_RS23030 - gluconate 2-dehydrogenase, at 727,734 to 728,474 _RS23030 BPHYT_RS23035: BPHYT_RS23035 - hypothetical protein, at 728,842 to 729,639 _RS23035 BPHYT_RS23040: BPHYT_RS23040 - peptidase, at 729,666 to 731,936 _RS23040 Position (kb) 728 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1at 728.143 kb on + strand, within BPHYT_RS23030at 728.436 kb on + strandat 728.456 kb on + strandat 728.457 kb on - strandat 728.482 kb on + strandat 728.483 kb on - strandat 728.483 kb on - strandat 728.585 kb on - strandat 728.819 kb on + strandat 728.819 kb on + strandat 728.820 kb on - strandat 728.820 kb on - strandat 728.904 kb on + strandat 728.946 kb on - strand, within BPHYT_RS23035at 729.277 kb on - strand, within BPHYT_RS23035at 729.512 kb on + strand, within BPHYT_RS23035at 729.745 kb on + strandat 729.746 kb on - strandat 729.794 kb on - strandat 729.830 kb on + strandat 729.952 kb on + strand, within BPHYT_RS23040at 729.953 kb on - strand, within BPHYT_RS23040at 729.953 kb on - strand, within BPHYT_RS23040at 730.040 kb on - strand, within BPHYT_RS23040at 730.077 kb on - strand, within BPHYT_RS23040at 730.077 kb on - strand, within BPHYT_RS23040at 730.079 kb on - strand, within BPHYT_RS23040

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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728,143 + BPHYT_RS23030 0.55 -0.2
728,436 + +0.3
728,456 + -0.5
728,457 - -0.6
728,482 + +1.1
728,483 - -1.4
728,483 - +0.5
728,585 - +0.8
728,819 + -1.3
728,819 + -1.3
728,820 - -0.9
728,820 - -1.1
728,904 + -2.6
728,946 - BPHYT_RS23035 0.13 +1.3
729,277 - BPHYT_RS23035 0.55 +1.3
729,512 + BPHYT_RS23035 0.84 -0.4
729,745 + -0.1
729,746 - -0.3
729,794 - -3.1
729,830 + +0.6
729,952 + BPHYT_RS23040 0.13 +0.8
729,953 - BPHYT_RS23040 0.13 +0.9
729,953 - BPHYT_RS23040 0.13 +1.1
730,040 - BPHYT_RS23040 0.16 -0.5
730,077 - BPHYT_RS23040 0.18 +0.5
730,077 - BPHYT_RS23040 0.18 -0.8
730,079 - BPHYT_RS23040 0.18 -0.1

Or see this region's nucleotide sequence