Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22820

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22815 and BPHYT_RS22820 are separated by 561 nucleotidesBPHYT_RS22820 and BPHYT_RS22825 are separated by 116 nucleotides BPHYT_RS22815: BPHYT_RS22815 - TonB-denpendent receptor, at 677,270 to 679,615 _RS22815 BPHYT_RS22820: BPHYT_RS22820 - hydrolase, at 680,177 to 680,971 _RS22820 BPHYT_RS22825: BPHYT_RS22825 - hypothetical protein, at 681,088 to 681,438 _RS22825 Position (kb) 680 681Strain fitness (log2 ratio) -1 0 1 2at 680.499 kb on + strand, within BPHYT_RS22820at 680.550 kb on + strand, within BPHYT_RS22820

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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680,499 + BPHYT_RS22820 0.41 +2.5
680,550 + BPHYT_RS22820 0.47 +0.6

Or see this region's nucleotide sequence