Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22730

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22725 and BPHYT_RS22730 are separated by 52 nucleotidesBPHYT_RS22730 and BPHYT_RS22735 are separated by 30 nucleotidesBPHYT_RS22735 and BPHYT_RS22740 are separated by 19 nucleotides BPHYT_RS22725: BPHYT_RS22725 - glycosyl transferase family 51, at 653,652 to 656,732 _RS22725 BPHYT_RS22730: BPHYT_RS22730 - serine/threonine kinase, at 656,785 to 658,011 _RS22730 BPHYT_RS22735: BPHYT_RS22735 - sugar ABC transporter ATP-binding protein, at 658,042 to 658,839 _RS22735 BPHYT_RS22740: BPHYT_RS22740 - ABC transporter permease, at 658,859 to 659,845 _RS22740 Position (kb) 656 657 658 659Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 655.851 kb on - strand, within BPHYT_RS22725at 655.858 kb on - strand, within BPHYT_RS22725at 655.904 kb on + strand, within BPHYT_RS22725at 656.601 kb on + strandat 656.711 kb on + strandat 656.846 kb on + strandat 656.847 kb on - strandat 657.527 kb on - strand, within BPHYT_RS22730at 657.734 kb on + strand, within BPHYT_RS22730at 658.562 kb on - strand, within BPHYT_RS22735at 658.562 kb on - strand, within BPHYT_RS22735

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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655,851 - BPHYT_RS22725 0.71 +0.4
655,858 - BPHYT_RS22725 0.72 -0.7
655,904 + BPHYT_RS22725 0.73 +3.2
656,601 + -0.5
656,711 + +0.6
656,846 + -1.3
656,847 - -3.0
657,527 - BPHYT_RS22730 0.60 -0.5
657,734 + BPHYT_RS22730 0.77 -6.2
658,562 - BPHYT_RS22735 0.65 -1.0
658,562 - BPHYT_RS22735 0.65 +0.4

Or see this region's nucleotide sequence