Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22635

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22630 and BPHYT_RS22635 are separated by 20 nucleotidesBPHYT_RS22635 and BPHYT_RS22640 are separated by 350 nucleotides BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611 _RS22630 BPHYT_RS22635: BPHYT_RS22635 - dihydrodipicolinate synthase, at 634,632 to 635,537 _RS22635 BPHYT_RS22640: BPHYT_RS22640 - hydroxyproline-2-epimerase, at 635,888 to 636,844 _RS22640 Position (kb) 634 635 636Strain fitness (log2 ratio) -2 -1 0 1 2 3at 633.664 kb on + strandat 633.665 kb on - strandat 633.751 kb on + strandat 633.791 kb on - strandat 633.794 kb on + strandat 633.795 kb on - strandat 633.800 kb on - strandat 633.853 kb on + strandat 633.858 kb on + strandat 633.859 kb on - strandat 633.859 kb on - strandat 633.876 kb on + strandat 633.876 kb on + strandat 633.959 kb on - strand, within BPHYT_RS22630at 634.165 kb on + strand, within BPHYT_RS22630at 634.165 kb on + strand, within BPHYT_RS22630at 634.232 kb on - strand, within BPHYT_RS22630at 634.525 kb on - strand, within BPHYT_RS22630at 634.831 kb on + strand, within BPHYT_RS22635at 634.832 kb on - strand, within BPHYT_RS22635at 634.876 kb on + strand, within BPHYT_RS22635at 634.877 kb on - strand, within BPHYT_RS22635at 634.909 kb on - strand, within BPHYT_RS22635at 635.132 kb on - strand, within BPHYT_RS22635at 635.207 kb on - strand, within BPHYT_RS22635at 635.472 kb on + strandat 635.473 kb on - strandat 635.514 kb on + strandat 635.529 kb on - strandat 635.576 kb on - strandat 635.576 kb on - strandat 635.911 kb on + strandat 635.912 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
remove
633,664 + -1.7
633,665 - +0.7
633,751 + +1.1
633,791 - -0.9
633,794 + +0.6
633,795 - -0.5
633,800 - +0.1
633,853 + -0.5
633,858 + -0.3
633,859 - +0.8
633,859 - -1.1
633,876 + -0.0
633,876 + +0.1
633,959 - BPHYT_RS22630 0.12 -1.8
634,165 + BPHYT_RS22630 0.40 -0.9
634,165 + BPHYT_RS22630 0.40 +1.4
634,232 - BPHYT_RS22630 0.49 -0.2
634,525 - BPHYT_RS22630 0.88 -1.9
634,831 + BPHYT_RS22635 0.22 +1.6
634,832 - BPHYT_RS22635 0.22 +0.4
634,876 + BPHYT_RS22635 0.27 +0.6
634,877 - BPHYT_RS22635 0.27 -0.2
634,909 - BPHYT_RS22635 0.31 +0.7
635,132 - BPHYT_RS22635 0.55 +0.9
635,207 - BPHYT_RS22635 0.63 +0.3
635,472 + -0.6
635,473 - +0.3
635,514 + +2.8
635,529 - -0.2
635,576 - -0.5
635,576 - +0.4
635,911 + +0.8
635,912 - +0.4

Or see this region's nucleotide sequence