Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22550 and BPHYT_RS22555 are separated by 138 nucleotides BPHYT_RS22555 and BPHYT_RS22560 are separated by 14 nucleotides BPHYT_RS22560 and BPHYT_RS22565 are separated by 533 nucleotides
BPHYT_RS22550: BPHYT_RS22550 - manganese transporter, at 620,596 to 621,924
_RS22550
BPHYT_RS22555: BPHYT_RS22555 - transcriptional regulator, at 622,063 to 622,632
_RS22555
BPHYT_RS22560: BPHYT_RS22560 - flagellar transcriptional regulator FlhD, at 622,647 to 622,967
_RS22560
BPHYT_RS22565: BPHYT_RS22565 - membrane protein, at 623,501 to 624,724
_RS22565
Position (kb) 622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.948 kb on - strand at 622.325 kb on - strand, within BPHYT_RS22555 at 622.325 kb on - strand, within BPHYT_RS22555 at 622.328 kb on + strand, within BPHYT_RS22555 at 622.329 kb on - strand, within BPHYT_RS22555 at 622.403 kb on + strand, within BPHYT_RS22555 at 622.442 kb on + strand, within BPHYT_RS22555 at 622.442 kb on + strand, within BPHYT_RS22555 at 622.594 kb on + strand at 622.649 kb on - strand at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.994 kb on - strand at 622.996 kb on + strand at 623.017 kb on + strand at 623.073 kb on + strand at 623.133 kb on - strand at 623.173 kb on + strand at 623.223 kb on + strand at 623.386 kb on + strand at 623.393 kb on + strand at 623.567 kb on + strand at 623.638 kb on - strand, within BPHYT_RS22565 at 623.650 kb on + strand, within BPHYT_RS22565 at 623.821 kb on + strand, within BPHYT_RS22565 at 623.821 kb on + strand, within BPHYT_RS22565 at 623.822 kb on - strand, within BPHYT_RS22565
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 621,948 - -0.2 622,325 - BPHYT_RS22555 0.46 +0.6 622,325 - BPHYT_RS22555 0.46 +1.1 622,328 + BPHYT_RS22555 0.46 -0.3 622,329 - BPHYT_RS22555 0.47 +0.4 622,403 + BPHYT_RS22555 0.60 +0.2 622,442 + BPHYT_RS22555 0.66 +0.7 622,442 + BPHYT_RS22555 0.66 +0.5 622,594 + -1.3 622,649 - -2.4 622,896 - BPHYT_RS22560 0.78 +1.7 622,896 - BPHYT_RS22560 0.78 +1.3 622,896 - BPHYT_RS22560 0.78 -0.9 622,896 - BPHYT_RS22560 0.78 +0.4 622,896 - BPHYT_RS22560 0.78 -0.5 622,994 - -1.1 622,996 + +0.1 623,017 + +0.4 623,073 + +1.0 623,133 - -1.3 623,173 + +0.9 623,223 + +0.2 623,386 + +1.7 623,393 + +1.6 623,567 + +0.3 623,638 - BPHYT_RS22565 0.11 +1.9 623,650 + BPHYT_RS22565 0.12 +0.7 623,821 + BPHYT_RS22565 0.26 +0.2 623,821 + BPHYT_RS22565 0.26 +0.4 623,822 - BPHYT_RS22565 0.26 -0.8
Or see this region's nucleotide sequence